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Clindet documentation
Contents:
Quick Start
1. Clindet
2. Setup Clindet
3. Use case
4. clindet workflow
DNAseq analysis
1. Whole exome sequence data analysis
1.1. WES
1.2. Call Mutation
1.3. Call CNV
1.4. WES
2. Whole genome sequence data analysis
2.1. WGS
2.2. Call Mutation
2.3. Call CNV
2.4. WGS SV (structural variants calling)
RNAseq analysis
1. QC
2. Expression
3. Gene fusion
Use Case
1. Real world example
2. Use case I: SNV and CNV calling from Whole exome sequencing data
3. Use case II: Fusion genes detection from multiple myeloma patient RNA-seq
4. Use case III: Mutational signatures analysis for
C.elegans
snakemake/clindet: Citations
.md
.pdf
Call CNV
2.3.
Call CNV
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