Clindet documentation

Contents:

• Quick Start
  • 1. Clindet
  • 2. Setup Clindet
  • 3. Use case
  • 4. clindet workflow
• DNAseq analysis
  • 1. Whole exome sequence data analysis
  • 2. Whole genome sequence data analysis
• RNAseq analysis
  • 1. QC
  • 2. Expression
  • 3. Gene fusion
• Use Case
  • 1. Real world example
  • 2. Use case I: SNV and CNV calling from Whole exome sequencing data
  • 3. Use case II: Fusion genes detection from multiple myeloma patient RNA-seq
  • 4. Use case III: Mutational signatures analysis for C.elegans
• snakemake/clindet: Citations
  • snakemake
  • Pipeline tools
  • Software packaging/containerisation tools

Indices and tables

• Index

• Module Index

• Search Page