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Clindet documentation

Contents:

Quick Start
DNAseq analysis
- 1. Whole exome sequence data analysis
- 2. Whole genome sequence data analysis
RNAseq analysis
Use Case
snakemake/clindet: Citations

.md

WGS

Contents

2.1.1. fastq QC
2.1.2. Reads mapping
2.1.3. Reads mapping statistics
2.1.4. GATK preprocess

2.1. WGS#

2.1.1. fastq QC#

Note

sdfa

2.1.2. Reads mapping#

2.1.3. Reads mapping statistics#

2.1.4. GATK preprocess#

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2. Whole genome sequence data analysis

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2.2. Call Mutation

Contents

2.1.1. fastq QC
2.1.2. Reads mapping
2.1.3. Reads mapping statistics
2.1.4. GATK preprocess

By Yuliang Zhang

© Copyright 2024, Yuliang Zhang.