2. Whole genome sequence data analysis

• 2.1. WGS
  • 2.1.1. fastq QC
  • 2.1.2. Reads mapping
  • 2.1.3. Reads mapping statistics
  • 2.1.4. GATK preprocess
• 2.2. Call Mutation
• 2.3. Call CNV
• 2.4. WGS SV (structural variants calling)
  • 2.4.1. call SVs from different softwares
  • 2.4.2. consensus results by jasmine
  • 2.4.3. output file type