Use Case

• 1. Real world example
• 2. Use case I: SNV and CNV calling from Whole exome sequencing data
  • 2.1. Background
  • 2.2. Setup a project folder
  • 2.3. Download data and
  • 2.4. Write an Snakemake file from template
  • 2.5. Run clindet
• 3. Use case II: Fusion genes detection from multiple myeloma patient RNA-seq
  • 3.1. Background
  • 3.2. Setup a project folder
  • 3.3. Download data and
  • 3.4. Write an Snakemake file from template
  • 3.5. write Snakemake file
  • 3.6. Run clindet
  • 3.7. Results
• 4. Use case III: Mutational signatures analysis for C.elegans
  • 4.1. Background
  • 4.2. Download data
  • 4.3. Download and confing C.elegans genome file
  • 4.4. write Snakemake file
  • 4.5. Run clindet
  • 4.6. Results